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Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.

Python and ImageJ scripts designed to track single cells and analyze fluorescence

Scripts for analysis of genome-wide perturb-seq in primary human T cells

This repository contains scripts used for analysis and figure generation in Maier, B., Leader, A.M., Chen, S.T. et al. A conserved dendritic-cell regulatory program limits antitumour immunity. Nature 580, 257–262 (2020). https://doi.org/10.1038/s41586-020-2134-y

This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, Andrew J. Martins, William W. Lau, Nicholas Rachmaninoff, ..., John S. Tsang. "Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19" C... Read more

Python scripts for computing a dynamic user equilibrium solution for a multi-OD road network. The model uses a cell transmission model for network loading and considers both departure time choices and splitting rates.

single cell and bulk RNASeq analysis scripts

Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human Heart Failure"

Cell ID Coordinates is a Python Script to fetch Location Data(Latitude, Longitude) of Cell Towers

3DMorph is a MATLAB-based script that analyzes microglia morphology from 3D data. Outputs include cell and territorial volume, branch length, and number of branch and end points.