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GitHub Open Source Repositories

Search: MicroscoPy

Page 6

Showing 10 results from 508

A

axondeepseg/axondeepseg

GitHub Python MIT License

Axon/Myelin segmentation using Deep Learning

โ˜… 127 Forks 33 axondeepseg Updated 03 Jun 2026

External source

GitHub

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B

bioio-devs/bioio

GitHub Python BSD 3-Clause "New" or "Revised" License

Image reading, metadata management, and image writing for Microscopy images in Python

โ˜… 125 Forks 10 bioio-devs Updated 19 May 2026

External source

GitHub

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D

ImagingDataCommons/dicom-microscopy-viewer

GitHub JavaScript MIT License

Web-based DICOM slide microscopy viewer library

โ˜… 124 Forks 48 ImagingDataCommons Updated 07 Jun 2026

External source

GitHub

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M

SergeiVKalinin/ML-ElectronMicroscopy-2023

GitHub Jupyter Notebook

No description available from source.

โ˜… 123 Forks 37 SergeiVKalinin Updated 29 Apr 2026

External source

GitHub

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D

TuragaLab/DECODE

GitHub Python GNU General Public License v3.0

This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

โ˜… 123 Forks 34 TuragaLab Updated 08 Jun 2026

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GitHub

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P

nasa/pretrained-microscopy-models

GitHub Jupyter Notebook MIT License

No description available from source.

โ˜… 119 Forks 31 nasa Updated 12 May 2026

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GitHub

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C

hammerlab/cytokit

GitHub Jupyter Notebook Apache License 2.0

Microscopy Image Cytometry Toolkit

โ˜… 116 Forks 18 hammerlab Updated 08 May 2026

External source

GitHub

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F

yijiang1/fold_slice

GitHub MATLAB

Electron/X-ray ptychography and tomography/laminography

โ˜… 116 Forks 42 yijiang1 Updated 30 May 2026

External source

GitHub

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S

MannLabs/scPortrait

GitHub Python Apache License 2.0

scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

โ˜… 110 Forks 8 MannLabs Updated 23 May 2026

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GitHub

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S

NICALab/SUPPORT

GitHub Python GNU General Public License v3.0

Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.

โ˜… 107 Forks 22 NICALab Updated 08 Jun 2026

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GitHub

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Showing first 508 accessible GitHub results.