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GitHub Open Source Repositories

Search: MicroscoPy

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Showing 10 results from 508

B

brainglobe/brainreg

GitHub Python BSD 3-Clause "New" or "Revised" License

Automated 3D brain registration with support for multiple species and atlases.

โ˜… 149 Forks 36 brainglobe Updated 02 Jun 2026

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GitHub

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P

jungmannlab/picasso

GitHub Python MIT License

A collection of tools for painting super-resolution images

โ˜… 144 Forks 57 jungmannlab Updated 30 May 2026

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GitHub

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P

cytomining/pycytominer

GitHub Python BSD 3-Clause "New" or "Revised" License

Python package for image-based profiling bioinformatics

โ˜… 142 Forks 40 cytomining Updated 04 Jun 2026

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GitHub

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P

asarnow/pyem

GitHub Python GNU General Public License v3.0

Python programs for electron microscopy

โ˜… 140 Forks 55 asarnow Updated 04 Jun 2026

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GitHub

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N

BlueBrain/NeuroMorphoVis

GitHub Python GNU General Public License v3.0

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

โ˜… 137 Forks 27 BlueBrain Updated 18 May 2026

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GitHub

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T

MatthewFilipovich/torchoptics

GitHub Python MIT License

Differentiable wave optics simulation library built on PyTorch

โ˜… 137 Forks 19 MatthewFilipovich Updated 05 Jun 2026

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GitHub

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T

weigertlab/trackastra

GitHub Python BSD 3-Clause "New" or "Revised" License

Transformer-based cell tracking for live-cell microscopy

โ˜… 130 Forks 29 weigertlab Updated 28 Apr 2026

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GitHub

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S

weigertlab/spotiflow

GitHub Python BSD 3-Clause "New" or "Revised" License

Accurate and efficient spot detection for microscopy data

โ˜… 130 Forks 19 weigertlab Updated 08 Jun 2026

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GitHub

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juglab/EmbedSeg

GitHub Python Other

Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

โ˜… 127 Forks 25 juglab Updated 31 May 2026

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GitHub

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constantinpape/torch-em

GitHub Python MIT License

Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

โ˜… 127 Forks 30 constantinpape Updated 07 Jun 2026

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GitHub

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Showing first 508 accessible GitHub results.