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7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, finding regulatory motifs, analyzing genome rearrangements, identifying proteins, and many other topics.

Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"

Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency" by Nair, Ameen et al.

No description available from source.

Java library that implements the attractor finding method described in Chaos 23 (2) 025111, and the control method described in https://doi.org/10.1371/journal.pcbi.1004193

Template Development Toolkit for Joomla

No description available from source.

A DL-based framework for sequence and shape motif identification in the human genome

ChromBERT: Uncovering Chromatin State Motifs in the Human Genome using a BERT-based Approach