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GitHub Open Source Repositories

Search: kraken2

Page 2

Showing 7 results from 17

N

angelovangel/nxf-kraken2

GitHub Nextflow MIT License

A simple nextflow pipeline for running kraken2 and bracken in a docker container

โ˜… 21 Forks 8 angelovangel Updated 29 May 2026
K

sipost1/kraken2OTUtable

GitHub Python MIT License

Creates a simple OTU table from Kraken2 report.

โ˜… 13 Forks 2 sipost1 Updated 19 Nov 2025
K

Sam-Sims/kractor

GitHub Rust MIT License

Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.

โ˜… 13 Forks 1 Sam-Sims Updated 14 Jun 2026
P

matnguyen/Perseus

GitHub Python MIT License

Lineage-aware Kraken2 refinement for long-read metagenomics

โ˜… 12 Forks 0 matnguyen Updated 28 May 2026
S

danisven/StringMeUp

GitHub Python MIT License

A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.

โ˜… 11 Forks 2 danisven Updated 12 May 2026
S

jeanmanguy/spideog

GitHub Rust Apache License 2.0

๐Ÿฆ spideog - Command line utility for Kraken2 reports.

โ˜… 11 Forks 1 jeanmanguy Updated 09 Sep 2025
M

LessUp/micos-2024

GitHub R MIT License

End-to-end Metagenomic Intelligence and Comprehensive Omics Suite (Mammoth Cup 2024 Entry) | ็ซฏๅˆฐ็ซฏๅฎๅŸบๅ› ็ป„็ปผๅˆๅˆ†ๆžๅนณๅฐ๏ผˆ็Œ›็Šธๆฏ2024ๅ‚่ต›้กน็›ฎ๏ผ‰

โ˜… 11 Forks 3 LessUp Updated 22 May 2026
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Showing first 17 accessible GitHub results.