Explore live open-source projects and AI models.

The second version of the Kraken taxonomic sequence classification system

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Snakemake workflow for metagenomic classification with Kraken2

taxonomic classifier based on the kraken2 algorithms and more

A pipeline to investigate horizontal gene transfer from NGS data

Calculate confidence scores from Kraken2 output

Kraken2 Server

Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each column is number of reads that were rooted to this taxon (column 2 in summary)