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GitHub Open Source Repositories

Search: dada2

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Showing 10 results from 19

D

benjjneb/dada2

GitHub R GNU Lesser General Public License v3.0

Accurate sample inference from amplicon data with single nucleotide resolution

โ˜… 552 Forks 168 benjjneb Updated 15 May 2026

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GitHub

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A

nf-core/ampliseq

GitHub Nextflow MIT License

Amplicon sequencing analysis workflow using DADA2 and QIIME2

โ˜… 250 Forks 156 nf-core Updated 06 Jun 2026

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GitHub

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D

a-h-b/dadasnake

GitHub Python GNU General Public License v3.0

Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake

โ˜… 51 Forks 19 a-h-b Updated 05 Jun 2026

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GitHub

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M

cafferychen777/MicrobiomeStat

GitHub R

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

โ˜… 50 Forks 5 cafferychen777 Updated 06 Jun 2026

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GitHub

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T

aomlomics/tourmaline

GitHub Python BSD 3-Clause "New" or "Revised" License

Amplicon sequence processing workflow using QIIME 2 and Snakemake

โ˜… 46 Forks 22 aomlomics Updated 09 Jun 2026

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GitHub

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1

ycl6/16S-rDNA-V3-V4

GitHub R GNU General Public License v3.0

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

โ˜… 40 Forks 20 ycl6 Updated 03 Jun 2026

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GitHub

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L

benjjneb/LRASManuscript

GitHub HTML

Reproducible Analyses accompanying DADA2 + PacBio Manuscript

โ˜… 37 Forks 13 benjjneb Updated 28 Apr 2026

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GitHub

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E

jcmcnch/eASV-pipeline-for-515Y-926R

GitHub Shell GNU General Public License v3.0

This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools

โ˜… 37 Forks 11 jcmcnch Updated 12 Jun 2026

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M

shandley/Microbiome-Analysis-Using-R

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Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

โ˜… 28 Forks 21 shandley Updated 27 Apr 2026

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GitHub

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Q

qiime2/q2-dada2

GitHub Python BSD 3-Clause "New" or "Revised" License

QIIME 2 plugin wrapping DADA2

โ˜… 24 Forks 40 qiime2 Updated 09 Jun 2026

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GitHub

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10 results on this page ยท 19 total found

Showing first 19 accessible GitHub results.