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Search: DNA-seq-analysis

Page 1

Showing 6 results from 6

D

crazyhottommy/DNA-seq-analysis

GitHub Shell

DNA sequencing analysis notes from Ming Tang

★ 148 Forks 61 crazyhottommy Updated 10 Mar 2026
A

seasoncloud/Alleloscope

GitHub R

Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral ... Read more

★ 33 Forks 5 seasoncloud Updated 10 Mar 2026
A

jfoox/abrfngs2

GitHub R

Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility

★ 18 Forks 4 jfoox Updated 31 Dec 2025
D

NIGMS/DNA-Methylation-Sequencing-Analysis-with-WGBS

GitHub Jupyter Notebook

In this module, you will learn how to download raw sequence data, calculate differentially methylated regions, and run a canonical methyl-seq pipeline in Nextflow

★ 17 Forks 4 NIGMS Updated 27 Feb 2026
O

CL-CHEN-Lab/OK-Seq

GitHub R GNU General Public License v3.0

R package for the analysis of OK-Seq data to study DNA replication fork directionality: from count matrices, RFD calculation to inititation/termination zone calling.

★ 12 Forks 6 CL-CHEN-Lab Updated 05 Jan 2025
B

ejh243/BrainFANS

GitHub R Other

Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and ChIP-Seq

★ 11 Forks 6 ejh243 Updated 09 Jun 2026